Force field parameters

Details
Last Updated: Wednesday, 21 August 2013 14:02

The basic force field parameters can be found in the menu to the left. This includes itp, mdp and top files.

Subcategories

  • Particle definitions
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    1
  • Input parameters
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    1
  • General topology
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    1
  • Specific topologies
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    9
  • Lipids
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    21
  • Dry Martini
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    1
  • Martini DNA
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    1
  • Martini RNA
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    1
  • Polymers

    Available Martini polymer topologies are listed below according to their major category. Additional information for each polymer's, other topologies (e.g. Dry Martini, alternative, old), and supporting files can be found on the subpage of each polymer.

    If you have developed additional Martini polymer topologies and would like to post them here please contact Siewert J. Marrink This email address is being protected from spambots. You need JavaScript enabled to view it..

     

    Additionally, you can use Martini_PolyPly, developed by Fabian Grünewald. The software can be used to generate GROMACS itp files of polymers from a monomer itp-file and generate coordinates of polymer molecules from a complete topology file.

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