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normal How to evaluate the area per lipid in a transmembrane protein-lipid system?

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3 years 1 month ago #8876 by Jinyoung
How to evaluate the area per lipid in a transmembrane protein-lipid system? was created by Jinyoung
Hi everyone!
I had the equilibrated coarse-grained transmembrane protein-POPC bilayer system. However, although in the MARTINI lipid tutorial, the area per lipid can be calculated by dividing box XY / the number of lipids on each leaflet, I think that the area per lipid with such my system can not merely be calculated in this way.
How could I evaluate the area per lipid in such my system?

Any help will be highly appreciated! Thank you

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3 years 1 month ago #8877 by vainikka
Replied by vainikka on topic How to evaluate the area per lipid in a transmembrane protein-lipid system?
Hi,

Check out: pubmed.ncbi.nlm.nih.gov/24175728/

Haven't used the tool myself, but it could be useful.

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3 years 1 month ago #8878 by Jinyoung
Replied by Jinyoung on topic How to evaluate the area per lipid in a transmembrane protein-lipid system?
Thank you for reply!

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