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unanswered Rotation of the protein monomer within the membrane

  • James Starlight
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6 years 5 months ago #7431 by James Starlight
Rotation of the protein monomer within the membrane was created by James Starlight
Hello,


I have a complex system composed of 16 GPCRs embedded within the membrane, which has been made via the replication of 1 coarse-grained system using genconf.

I need to find a way to rotate selected monomer(s) in the prepared system to change the initial orientation of the monomers before running the simulation. I have tried to use editconf -rotate -n system.ndx providing an ndx file with the indication of the protein groups but it has rotated the whole system instead.

Are there any alternative ways besides the rotatation of the protein during the preparation of the monomer system via Martinize script ?

Thank you so much!

James

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