unanswered regarding martini model

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1 month 4 weeks ago #7747 by cm
cm created the topic: regarding martini model
hi
i am trying to do simulation on aggregation of proteins.i am following this tutorial
www.cgmartini.nl/index.php/tutorials-gen...ntroduction/proteins
the step upto
7. Start production run (without position restraints!); if your simulation crashes, some more equilibration steps might be needed. A sample trajectory is shown in Figure 2.

$ grompp -f dynamic.mdp -c equilibration.gro -p system.top -o dynamic.tpr
$ mdrun -deffnm dynamic -v

sholud i use any
Soluble protein: the elastic network approach
thanking you

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