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Backward.py error while submitting cg gro file
- anjukris
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5 years 7 months ago #7768
by anjukris
Backward.py error while submitting cg gro file was created by anjukris
Hi,
I encountered this error while running initram.py
I have seen a similar question on this forum with a solution that says that protonated ASP/GLU aren't in the default list of residues and that adding mapping definitions for the residues eliminates this error.
My structure also has protonated forms of these residues but how do I map these? I am a beginner and any help would be appreciated!
I encountered this error while running initram.py
File "/home/anjali/backward/backward.py", line 644, in <module>
struc = Structure(options["-f"].value,strict=options["-strict"].value)
File "/home/anjali/backward/backward.py", line 410, in __init__
d12.append(d12[-1])
IndexError: list index out of range
I have seen a similar question on this forum with a solution that says that protonated ASP/GLU aren't in the default list of residues and that adding mapping definitions for the residues eliminates this error.
My structure also has protonated forms of these residues but how do I map these? I am a beginner and any help would be appreciated!
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- Newguy
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5 years 7 months ago #7786
by Newguy
Replied by Newguy on topic Backward.py error while submitting cg gro file
Hey anjukris nice question :D
Why?
Because for me it is the same. ^^
Need to use a POPC POPG bilayer but the .map just exists for POPC.
So how to map lipids? (or should I start a new topic?)
Why?
Because for me it is the same. ^^
Need to use a POPC POPG bilayer but the .map just exists for POPC.
So how to map lipids? (or should I start a new topic?)
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- riccardo
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5 years 6 months ago #7812
by riccardo
Replied by riccardo on topic Backward.py error while submitting cg gro file
Please see my reply in the other thread:
www.cgmartini.nl/index.php/component/kun...ckward-py-error#7811
www.cgmartini.nl/index.php/component/kun...ckward-py-error#7811
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