Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Backmapping - problem with the output structure Topic started 5 years 8 months ago, by z.sichaib Last Post 5 years 8 months ago by z.sichaib	Replies:2 Views:2446	Last Post by z.sichaib 5 years 8 months ago
Backward failed for CHOL molecules Topic started 6 years 5 months ago, by Smotta Last Post 5 years 8 months ago by songhd	Replies:8 Views:6676	Last Post by songhd 5 years 8 months ago
regarding martini model Topic started 5 years 8 months ago, by cm Last Post 5 years 8 months ago by cm	Replies:0 Views:1918	Last Post by cm 5 years 8 months ago
secondary structure analysis after converting from coarse grained to all atom Topic started 5 years 10 months ago, by cm Last Post 5 years 8 months ago by songhd	Replies:1 Views:2155	Last Post by songhd 5 years 8 months ago
Difficulties in Visualization of PDADMA30 Topic started 5 years 9 months ago, by Ali Last Post 5 years 9 months ago by peterkroon	Replies:2 Views:2352	Last Post by peterkroon 5 years 9 months ago
transformation of .xtc cg file to .xtc gro file Topic started 5 years 10 months ago, by cm Last Post 5 years 10 months ago by riccardo	Replies:3 Views:3587	Last Post by riccardo 5 years 10 months ago
converting from cg to aa Topic started 5 years 10 months ago, by cm Last Post 5 years 10 months ago by cm	Replies:9 Views:5743	Last Post by cm 5 years 10 months ago
Table_A_B.xvg Topic started 5 years 11 months ago, by Alexw Last Post 5 years 10 months ago by riccardo	Replies:1 Views:2051	Last Post by riccardo 5 years 10 months ago
Problem determining mapping coordinates for atom C1 of residue CHOL. Topic started 6 years 5 days ago, by naveen Last Post 6 years 3 days ago by riccardo	Replies:1 Views:3056	Last Post by riccardo 6 years 3 days ago
Running Backwards on Large Lipid-Only Systems Topic started 6 years 1 week ago, by naveen Last Post 6 years 3 days ago by riccardo	Replies:3 Views:2470	Last Post by riccardo 6 years 3 days ago
Adding a lipid to your protein with martinize.py Topic started 6 years 1 week ago, by mgautet Last Post 6 years 1 week ago by mgautet	Replies:2 Views:2515	Last Post by mgautet 6 years 1 week ago
Mapping DPC with backward.py Topic started 6 years 1 month ago, by almeida Last Post 6 years 1 month ago by almeida	Replies:2 Views:2595	Last Post by almeida 6 years 1 month ago
Color a protein by rmsd Topic started 6 years 2 months ago, by BioSFLab Last Post 6 years 2 months ago by BioSFLab	Replies:0 Views:2369	Last Post by BioSFLab 6 years 2 months ago
Energy minimization (EM-1.mdp) stops while doing backmapping Topic started 6 years 3 months ago, by yogi@martini Last Post 6 years 3 months ago by yogi@martini	Replies:2 Views:2960	Last Post by yogi@martini 6 years 3 months ago
backward em step 2 (bonded interactions only) failure Topic started 6 years 3 months ago, by naveen Last Post 6 years 3 months ago by riccardo	Replies:1 Views:2556	Last Post by riccardo 6 years 3 months ago
initram-v5.sh seg fault Topic started 6 years 7 months ago, by edesantis Last Post 6 years 3 months ago by jbarnoud	Replies:17 Views:7555	Last Post by jbarnoud 6 years 3 months ago
Analysis of the protein-protein interphaces established in CG simulations Topic started 6 years 5 months ago, by James Starlight Last Post 6 years 4 months ago by James Starlight	Replies:10 Views:4798	Last Post by James Starlight 6 years 4 months ago
Re-assignment of the chains in the coarse-grained pdb/ md trajectory Topic started 6 years 4 months ago, by James Starlight Last Post 6 years 4 months ago by James Starlight	Replies:0 Views:2473	Last Post by James Starlight 6 years 4 months ago
0-backward.gro does not contain backmapped topologies Topic started 6 years 4 months ago, by naveen Last Post 6 years 4 months ago by naveen	Replies:2 Views:2774	Last Post by naveen 6 years 4 months ago
Rotation of the protein monomer within the membrane Topic started 6 years 5 months ago, by James Starlight Last Post 6 years 5 months ago by James Starlight	Replies:0 Views:2378	Last Post by James Starlight 6 years 5 months ago

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General Purpose Coarse-Grained Force Field

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Tools 311 topics