seq2itp

A perl script to build your own peptide/protein topology (.itp). Use the -h option to see what it can do. As input it requires the amino acid sequence (.seq) and the secondary structure information (.ssd). Check out also the toy peptide example on the application page.

seq2itp.pl (version 1.1.5)
martini_v2.1_example.seq
martini_v2.1_example.ssd