cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations

Citation (APA 7)

Faustino, I., & Marrink, S. J. (2017). cgHeliParm: analysis of dsDNA helical parameters for coarse-grained MARTINI molecular dynamics simulations. Bioinformatics, 33(23), 3813-3815.

Abstract

We introduce cgHeliParm, a python program that provides the conformational analysis of Martini-based coarse-grained double strand DNA molecules. The software calculates the helical parameters such as base, base pair and base pair step parameters. cgHeliParm can be used for the analysis of coarse grain Martini molecular dynamics trajectories without transformation into atomistic models.