Problem : g_membed error
- Luca
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8 years 3 months ago - 8 years 3 months ago #5379
by Luca
Problem : g_membed error was created by Luca
Hi, i get a warning when i try to use Gromacs g_membed_d to embed a martini protein into a membrane+solvent martni system.
The number of growth steps (-nxy + -nz) is larger than the number of steps in the tpr.
If you are sure, you can increase maxwarn.
If i add -maxwarn 1 and ignore the warning the protein result is terrible
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how can i embed the protein in the right way, having the protein in the center of the membrane.
I followed this guide
manual.gromacs.org/archive/4.6.7/online/g_membed.html
The number of growth steps (-nxy + -nz) is larger than the number of steps in the tpr.
If you are sure, you can increase maxwarn.
If i add -maxwarn 1 and ignore the warning the protein result is terrible
This image is hidden for guests.
Please log in or register to see it.
how can i embed the protein in the right way, having the protein in the center of the membrane.
I followed this guide
manual.gromacs.org/archive/4.6.7/online/g_membed.html
Last edit: 8 years 3 months ago by Luca.
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