General topics 671 topics


Martini Philosophy 61 topics

Why 4-to-1 mapping? Why a limited number of particle types?
Problem in AA to CG file con ...
by mukhergm
1 month 3 weeks ago

Tools 236 topics

Scripts, programs and software to use with Martini simulations.
Re: how to add ions
by peterkroon
1 day 13 hours ago

mdp Options 93 topics

Simulation parameters for Martini simulations.
Re: PME, PBC, and pressure mdp set ...
2 weeks 2 days ago

Other 144 topics

Everything that doesn't fit anywhere else.
Re: error message 'Topology includ ...
by vainikka
1 month 2 weeks ago

Tutorial 112 topics

Issues about the Martini tutorial
Re: starting the simulaion
by atefeh.ghlzd
1 month 4 days ago

Multiscaling 4 topics

Combining different levels of resolution.
Re: Martini waters in the hybrid m ...
by p278107
4 months 4 days ago

Dry Martini 7 topics

Martini with implicit water.
Re: membrane folding using dry MAR ...
by CharlyE
4 months 1 week ago
Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.
Re: Running alchemical amino acid ...
by wuzhiyi
3 weeks 1 day ago

Force Fields 395 topics


Lipids 121 topics

Everything that has to do with the original Martini lipid forcefield.
Re: DPC single monomer
by atefeh.ghlzd
1 week 4 days ago

Proteins 115 topics

Everything that has to do with the Martini extension for proteins and peptides.
Re: Martini studies on aggregation ...
by peterkroon
1 month 3 weeks ago

Sugars 4 topics

Everything concerning the Sweet Martini sugar extension.
Re: Covalently link glycan (NAG) g ...
by siladitya.padhi
4 months 2 days ago

Water 31 topics

Everything about water, since (almost) every biological system contains water.
Re: Yet another thread about LINCS ...
by riccardo
3 months 1 week ago

Nucleotides 25 topics

Everything that has to do with the Martini extension to nucleotides.
Re: Martini dsRNA tutorial setup c ...
by ibrahim
3 months 4 weeks ago

Other Molecules 99 topics

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Force constants for a new mole ...
by peterkroon
1 month 3 weeks ago
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