General topics 872 topics

Category

Martini Philosophy 82 topics

Why 4-to-1 mapping? Why a limited number of particle types?
Martini3 bead sizes
by gpoon
6 months 3 weeks ago

Tools 311 topics

Scripts, programs and software to use with Martini simulations.
Re: Martinizing a solvated phospho ...
by bart
1 month 2 weeks ago

mdp Options 107 topics

Simulation parameters for Martini simulations.
How to add scaling factor for ...
by Saman Fatihi
1 month 1 day ago

Other 177 topics

Everything that doesn't fit anywhere else.
Martini 3 Density Profile is o ...
by arthurmluz
1 week 6 days ago

Tutorial 135 topics

Issues about the Martini tutorial
Martini tutorials: Free energy ...
by boshra
2 months 3 weeks ago

Multiscaling 6 topics

Combining different levels of resolution.
Hybrid model with cholesterol ...
by nambinik
2 years 1 month ago

Dry Martini 7 topics

Martini with implicit water.
Re: membrane folding using dry MAR ...
by CharlyE
3 years 10 months ago
Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.
Marini 3 Charmm36 mapping file ...
by songhd
2 weeks 6 days ago

Force Fields 509 topics

Category

Lipids 142 topics

Everything that has to do with the original Martini lipid forcefield.
MARTINI 3 lipid bilayer simula ...
by saini
3 months 1 week ago

Proteins 142 topics

Everything that has to do with the Martini extension for proteins and peptides.
Re: Protein structure collapsing
by aabhatt
1 month 4 weeks ago

Sugars 8 topics

Everything concerning the Sweet Martini sugar extension.
Re: there isn't any ff-parameters ...
by boshra
6 months 3 weeks ago

Water 46 topics

Everything about water, since (almost) every biological system contains water.
Re: Energy minimization with polar ...
by LiguoWang
10 months 4 days ago

Nucleotides 40 topics

Everything that has to do with the Martini extension to nucleotides.
Martini-3 for poly-Uracil
by sayantan0510
7 months 4 days ago

Other Molecules 131 topics

Any question about molecules that doesn't fit in the other forums? Post it here.
add a new polymer with SP0 bea ...
by Leila_sharifi
3 months 1 week ago
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