General topics (480 topics)

Category

Martini Philosophy (38 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Re: Reason for different number of ...
by jbarnoud
4 months 2 weeks ago

Tools (166 topics)

Scripts, programs and software to use with Martini simulations.
Re: Energy minimization (EM-1.mdp) ...
by yogi@martini
3 days 18 hours ago

mdp Options (67 topics)

Simulation parameters for Martini simulations.
Re: free energy perturbation mdp
by atsmonraz
1 week 1 day ago

Other (110 topics)

Everything that doesn't fit anywhere else.
Re: Naproxen parameters
by ric.concu
2 days 19 hours ago

Tutorial (92 topics)

Issues about the Martini tutorial
Re: initram.sh error
by riccardo
3 days 18 hours ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
9 months 3 weeks ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
1 year 4 months ago

Force Fields (308 topics)

Category

Lipids (94 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: parametrize new lipids
by peterkroon
1 week 5 days ago

Proteins (95 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: intrinsically disordered prote ...
by peterkroon
1 month 1 week ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
3 years 6 months ago

Water (23 topics)

Everything about water, since (almost) every biological system contains water.
Re: Water froze at 303 K in Gromac ...
by peterkroon
1 year 5 months ago

Nucleotides (15 topics)

Everything that has to do with the Martini extension to nucleotides.
Martini tutorials: DNA
by ChristinaL
8 months 1 week ago

Other Molecules (79 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Bond/angle distribution not ma ...
by Pim
2 weeks 4 days ago
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