General topics (502 topics)


Martini Philosophy (39 topics)

Why 4-to-1 mapping? Why a limited number of particle types?
Matching bilayer thickness bet ...
by yogi@martini
3 months 3 weeks ago

Tools (178 topics)

Scripts, programs and software to use with Martini simulations.
Re: transformation of .xtc cg file ...
by riccardo
3 days 18 hours ago

mdp Options (70 topics)

Simulation parameters for Martini simulations.
Re: How to set Fourier spacing val ...
by Cohan
4 weeks 20 hours ago

Other (115 topics)

Everything that doesn't fit anywhere else.
Re: Calculating PMF for umbrella s ...
by Pim
1 month 3 days ago

Tutorial (93 topics)

Issues about the Martini tutorial
Re: Mapping DPC with
by almeida
2 months 2 days ago

Multiscaling (1 topics)

Combining different levels of resolution.
Re: Bonds shifting while going fro ...
by peterkroon
1 year 2 months ago

Dry Martini (6 topics)

Martini with implicit water.
Re: Dry Martini aggregation
by peterkroon
1 year 8 months ago

Force Fields (325 topics)


Lipids (98 topics)

Everything that has to do with the original Martini lipid forcefield.
Re: CHOL with virtual sites
by dariush
1 month 4 days ago

Proteins (101 topics)

Everything that has to do with the Martini extension for proteins and peptides.
Re: error: invalid command name "L ...
by cm
3 weeks 6 days ago

Sugars (2 topics)

Everything concerning the Sweet Martini sugar extension.
Re: parametes for guluronic acid r ...
by Clement
3 years 11 months ago

Water (25 topics)

Everything about water, since (almost) every biological system contains water.
Polarizable water permeating t ...
by Singh
1 month 2 weeks ago

Nucleotides (15 topics)

Everything that has to do with the Martini extension to nucleotides.
Martini tutorials: DNA
by ChristinaL
1 year 1 month ago

Other Molecules (84 topics)

Any question about molecules that doesn't fit in the other forums? Post it here.
Re: Possibility of partial charges ...
by Pim
1 month 19 hours ago
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