Proteins 106 topics

Everything that has to do with the Martini extension for proteins and peptides.

Subject	Replies / Views	Last Post
PEGylated protein Topic started 6 days 8 hours ago, by jk Last Post 13 hours 44 minutes ago by fgrunewald	Replies:10 Views:26	Last Post by fgrunewald 13 hours 44 minutes ago
Why "HIS0", "W", "NA", "CL" are not recognised as indices for "gmx trjconv"? Topic started 2 months 2 weeks ago, by lanselibai Last Post 2 months 2 weeks ago by lanselibai	Replies:2 Views:187	Last Post by lanselibai 2 months 2 weeks ago
Topology problems Topic started 3 years 8 months ago, by khada Last Post 2 months 2 weeks ago by maryam	Replies:2 Views:2168	Last Post by maryam 2 months 2 weeks ago
How the pH is reflected in the martini? Topic started 3 months 1 week ago, by lanselibai Last Post 2 months 3 weeks ago by lanselibai	Replies:1 Views:182	Last Post by lanselibai 2 months 3 weeks ago
secondary structure number codes of CG protein Topic started 6 months 4 weeks ago, by sxn Last Post 6 months 4 weeks ago by sxn	Replies:1 Views:406	Last Post by sxn 6 months 4 weeks ago
martinze adds one more atom to the .itp chain than the *.pdb structure posses Topic started 9 months 2 weeks ago, by tfischb Last Post 9 months 2 weeks ago by tfischb	Replies:2 Views:796	Last Post by tfischb 9 months 2 weeks ago
error: invalid command name "La::mevsvd_br" during secondry str. analysis Topic started 11 months 1 week ago, by cm Last Post 11 months 3 days ago by cm	Replies:4 Views:999	Last Post by cm 11 months 3 days ago
regarding disulfide bonds Topic started 1 year 2 weeks ago, by cm Last Post 1 year 2 weeks ago by peterkroon	Replies:8 Views:1480	Last Post by peterkroon 1 year 2 weeks ago
neutralization of martini protein cg Topic started 1 year 3 weeks ago, by cm Last Post 1 year 3 weeks ago by peterkroon	Replies:1 Views:820	Last Post by peterkroon 1 year 3 weeks ago
recentering the protein Topic started 1 year 3 weeks ago, by cm Last Post 1 year 3 weeks ago by cm	Replies:2 Views:1144	Last Post by cm 1 year 3 weeks ago
how to make two pdb in a one file using martinize py scripts Topic started 1 year 1 month ago, by cm Last Post 1 year 1 month ago by peterkroon	Replies:10 Views:1869	Last Post by peterkroon 1 year 1 month ago
How to cappe a C terminal residue in MARTINI? Is it important when the protein i Topic started 1 year 1 month ago, by z.sichaib Last Post 1 year 1 month ago by z.sichaib	Replies:0 Views:934	Last Post by z.sichaib 1 year 1 month ago
Capping residues Topic started 2 years 4 days ago, by edesantis Last Post 1 year 1 month ago by z.sichaib	Replies:1 Views:1430	Last Post by z.sichaib 1 year 1 month ago
intrinsically disordered protein Topic started 1 year 4 months ago, by dariush Last Post 1 year 4 months ago by peterkroon	Replies:3 Views:1653	Last Post by peterkroon 1 year 4 months ago
hole in the simulation box Topic started 1 year 8 months ago, by edesantis Last Post 1 year 8 months ago by edesantis	Replies:7 Views:2816	Last Post by edesantis 1 year 8 months ago
Simulation with applied electric field Topic started 1 year 11 months ago, by DB Last Post 1 year 11 months ago by peterkroon	Replies:1 Views:1588	Last Post by peterkroon 1 year 11 months ago
collagen parameter from MARTINIZE.py Topic started 2 years 1 day ago, by gupta.rakesh2 Last Post 1 year 11 months ago by gupta.rakesh2	Replies:1 Views:1446	Last Post by gupta.rakesh2 1 year 11 months ago
multiple chain Topic started 2 years 3 days ago, by albumns Last Post 1 year 11 months ago by albumns	Replies:1 Views:1505	Last Post by albumns 1 year 11 months ago
Martini Collagen Topic started 2 years 8 months ago, by Jingjie Yeo Last Post 2 years 4 days ago by gupta.rakesh2	Replies:2 Views:1760	Last Post by gupta.rakesh2 2 years 4 days ago
Collagen parameters Topic started 2 years 4 days ago, by gupta.rakesh2 Last Post 2 years 4 days ago by gupta.rakesh2	Replies:0 Views:1194	Last Post by gupta.rakesh2 2 years 4 days ago

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Proteins 106 topics