unanswered martinize script for RNA with distance greater than cutoff

  • mandar
  • mandar's Avatar Topic Author
  • Offline
  • Fresh Boarder
More
2 years 6 months ago #9139 by mandar
Hello Everyone,
I am building an RNA CG model using a martinize-nucleotide.py script. There is no TER or any other identifier to mark a new chain.
For some residues in this structure, the distance between O3' and P atoms is >=5 Angstrom. I think this makes a martinize-nucleotide.py script to make a new chain while building a coarse-grain model.
If this is the case, please can you point me to the correct option in the script to change the cutoff?

Thanks and Regards,
Mandar Kulkarni

Please Log in or Create an account to join the conversation.

Time to create page: 0.086 seconds