unanswered Ion masses in Martini 3.0

  • shalinijr
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1 year 7 months ago #9527 by shalinijr
Ion masses in Martini 3.0 was created by shalinijr
Hi all,

In the martini_v3.0.0_ions_v1.itp, for most of the ions, their actual masses are used as opposed to the standard mass for their respective particle types (ie TQ5 or SQ4) except the Na+ ion. Was this done for a specific reason such as to account for the low mobility of these ions in solution? I was wondering if it is recommended to use the actual mass for a cation/anion that is lighter than sodium.

Thank you,


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