unanswered Nonbonded interaction between differnt bead types

  • palashb
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1 year 1 month ago #9632 by palashb
While following the proteins and protein-DNA complex tutorial, I discovered that the non-bonded interaction parameters vary for the same types of beads. Upon comparing the Q0-Q0 non-bonded interactions in two .itp files ( www.cgmartini.nl/images/parameters/ITP/martini_v2.1.itp and www.cgmartini.nl/index.php/force-field-parameters/dna ), I noticed that they yield different values. I am curious to know the reasons behind these discrepancies.

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