unanswered cg_bonds script to back-map my trajectory

  • anna_banana
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8 months 5 days ago #9695 by anna_banana
cg_bonds script to back-map my trajectory was created by anna_banana

I am running the command on VMD: cg_bonds -top topol.top -topoltype "elastic" in order to view my structure .gro file in atomistic format.

I receive the error: "one atom appears twice in the list"

My system consists of RAMP LPS and DPPC, where I'm thinking there could be some potential atom names overlapping, but I'm not sure how to fix this problem so I can view my structure backmapped!

Please help!



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