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  3. Martini 3 open-beta

Martini 3 open-beta 47 topics

Welcome to Martini 3's own little forum. Don't forget to post the relevant version number to the questions and/or remarks.

Subject Replies / Views Last Post
unanswered
Nucleic acid simulation with Martini3
Topic started 2 years 9 months ago, by mount
Last Post 2 years 9 months ago
by mount
Replies:0
Views:1386
Last Post by mount
2 years 9 months ago
unanswered
Martini 2 vs Martini 3
Topic started 2 years 10 months ago, by peter
Last Post 2 years 10 months ago
by peter
Replies:0
Views:1595
Last Post by peter
2 years 10 months ago
normal
Increasing Protein-Water Interaction Strength & martinize.py
Topic started 3 years 1 week ago, by nkho
Last Post 2 years 11 months ago
by riccardo
Replies:1
Views:2396
Last Post by riccardo
2 years 11 months ago
normal
bbsc.sh script - errors
Topic started 4 years 10 months ago, by poojaric
Last Post 2 years 11 months ago
by jessicab
Replies:4
Views:3941
Last Post by jessicab
2 years 11 months ago
unanswered
martini3 water and ions problems using insane
Topic started 2 years 11 months ago, by mordurx
Last Post 2 years 11 months ago
by mordurx
Replies:0
Views:1295
Last Post by mordurx
2 years 11 months ago
normal
Atomtype mismatch : Martini 3 beta vs Martini 3
Topic started 3 years 3 weeks ago, by sayantan0510
Last Post 3 years 3 weeks ago
by riccardo
Replies:1
Views:2125
Last Post by riccardo
3 years 3 weeks ago
normal
Rational for changing some sigmas
Topic started 3 years 5 months ago, by CharlyE
Last Post 3 years 1 month ago
by riccardo
Replies:1
Views:2162
Last Post by riccardo
3 years 1 month ago
normal
Using insane.py from Martini 2
Topic started 3 years 7 months ago, by hawo
Last Post 3 years 1 month ago
by riccardo
Replies:3
Views:3472
Last Post by riccardo
3 years 1 month ago
normal
cholesterol topology
Topic started 4 years 9 months ago, by wuzhiyi
Last Post 3 years 1 month ago
by riccardo
Replies:2
Views:4967
Last Post by riccardo
3 years 1 month ago
normal
Doubt for ElNeDyn in martinize2
Topic started 3 years 2 months ago, by ROY
Last Post 3 years 2 months ago
by riccardo
Replies:1
Views:3137
Last Post by riccardo
3 years 2 months ago
normal
PMF of protein dimerization using MARTINI3 forcefield
Topic started 3 years 2 months ago, by ayan95
Last Post 3 years 2 months ago
by ayan95
Replies:2
Views:1125
Last Post by ayan95
3 years 2 months ago
normal
Non-bonded parameters for N4, N5, N6 (SN4, SN5 and SN6) and Q5 bead types
Topic started 3 years 2 months ago, by Sadeghi
Last Post 3 years 2 months ago
by Sadeghi
Replies:2
Views:1989
Last Post by Sadeghi
3 years 2 months ago
normal
Mapping strategy for Alkyl Polyglycosides, Martini 3
Topic started 3 years 3 months ago, by realjun.zhou
Last Post 3 years 2 months ago
by riccardo
Replies:2
Views:995
Last Post by riccardo
3 years 2 months ago
normal
Cyclohexane in Martini 3
Topic started 3 years 6 months ago, by aleme
Last Post 3 years 5 months ago
by aleme
Replies:2
Views:1598
Last Post by aleme
3 years 5 months ago
normal
Polarizable water in MARTINI 3
Topic started 5 years 2 months ago, by aleme
Last Post 3 years 5 months ago
by susa
Replies:5
Views:4573
Last Post by susa
3 years 5 months ago
normal
Missing bond for Cyclohexane
Topic started 3 years 8 months ago, by CharlyE
Last Post 3 years 8 months ago
by vainikka
Replies:3
Views:1428
Last Post by vainikka
3 years 8 months ago
normal
Running alchemical amino acid transformation with Martini 3
Topic started 3 years 9 months ago, by wuzhiyi
Last Post 3 years 9 months ago
by wuzhiyi
Replies:7
Views:2201
Last Post by wuzhiyi
3 years 9 months ago
normal
Martini 3.0 release?
Topic started 4 years 2 months ago, by pela3247
Last Post 3 years 11 months ago
by johnd
Replies:1
Views:2706
Last Post by johnd
3 years 11 months ago
normal
Parametrizing the Coco betaine molecule
Topic started 3 years 11 months ago, by realjun.zhou
Last Post 3 years 11 months ago
by vainikka
Replies:1
Views:1562
Last Post by vainikka
3 years 11 months ago
normal
Alternative positions in martinize2 script giving errors
Topic started 4 years 9 months ago, by andreashlarsen
Last Post 4 years 9 months ago
by peterkroon
Replies:3
Views:2156
Last Post by peterkroon
4 years 9 months ago
  1. General topics
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