normal self assebly of KALP protein in DPPC:ERROR

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9 years 9 months ago #4102 by b3115321
hello all:
i want to try study self assebly of KALP in DPPC and prepared 9 protein to generate a matrix like ...
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but when i was use grompp for minimization-vaccum them after CGed, the gromacs show me

ERROR: The cut-off length is longer than half the shortest box vector or
longer than the smallest box diagonal element. Increase the box size or
decrease rlist.
how could i solve this problem thank you .

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9 years 9 months ago #4105 by Clement
Replied by Clement on topic self assebly of KALP protein in DPPC:ERROR
Check the last line of your .gro file: null box dimensions are defined. Use editconf -d to define some.

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