normal Uncharged Lysine in MARTINI3

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3 years 3 weeks ago #8967 by rapha.v
Uncharged Lysine in MARTINI3 was created by rapha.v
I am currently working on MARTINI3 on a transmembrane helix with a Lysine in the middle of the membrane which is likely uncharged.
Thus I would like to use the neutral version of Lys in my simulations.
However, I could not find it in the force field files, and I am not sure which bead should be used in order to replace the charged one.

In MARTINI2, P1 replaces Qd ( www.cgmartini.nl/index.php/component/kun...ed-lysine-side-chain ). Should I use SP1 to replace SQ4p ?

Thank you very much,
Best regards,
Raphaƫlle

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1 year 9 months ago #9487 by liguo_UCAS
Replied by liguo_UCAS on topic Uncharged Lysine in MARTINI3
Same question. Do you have the answer?

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