normal Problem with Martini3 md run crash due to lincs warning in protein

  • nanogod
  • nanogod's Avatar Topic Author
  • Offline
  • Senior Boarder
More
2 years 7 months ago #9212 by nanogod
Hi,

I have tried to get Martini 3 to work for some time now ;) I am following the tutorial from the workshop in 2021 but with a different protein. After 500 ns or so i sometimes get a huge amount of lincs warnings with rotation above 90 degrees and the run crashes. The rotation can be about BB-BB and BB-SC. I am using elastic network with different strengths. I have tried with and without SCfix. I have no idea what is going on. Next I will try the vanilla tutorial to see if it crashes.

Anyone have any suggestions?

BR
Morten

Please Log in or Create an account to join the conversation.

More
2 years 6 months ago #9249 by riccardo
Did the vanilla tutorial work?

Please Log in or Create an account to join the conversation.

Time to create page: 0.094 seconds