unanswered Peptide expulsed from Bilayer

  • Alvaro
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1 year 2 months ago #9606 by Alvaro
Peptide expulsed from Bilayer was created by Alvaro
Hello everyone.

I know this is not the forum for this, but I have a question that I would really like to resolve.

I am fairly new to the use of martini and have managed to build several membranes (different compositions and dynamic parameters) to test the affinity and curvature that certain peptides could effect on these membranes.

I have efficiently achieved results, however, from time to time something peculiar occurs that I would like to ask you.

Depending on the amount of peptides and, in turn, the peptide, these escape from the membrane (assuming that it starts with the peptide inserted in the center of the membrane or, failing that, several peptides inserted inside the membrane at a standard distance between each other). they). There is any error? Is this type of disruption normal? Should I place some type of movement restriction? Does this correspond to an acceptable membrane disruption parameter? Is it a perse result?

Minimization Parameters [ Click to expand ]

Equilibration Parameters [ Click to expand ]

Production Run [ Click to expand ]

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