Proteins 142 topics

Everything that has to do with the Martini extension for proteins and peptides.

Subject	Replies / Views	Last Post
How the pH is reflected in the martini? Topic started 5 years 3 months ago, by lanselibai Last Post 5 years 2 months ago by lanselibai	Replies:1 Views:2883	Last Post by lanselibai 5 years 2 months ago
secondary structure number codes of CG protein Topic started 5 years 6 months ago, by sxn Last Post 5 years 6 months ago by sxn	Replies:1 Views:2902	Last Post by sxn 5 years 6 months ago
martinze adds one more atom to the .itp chain than the *.pdb structure posses Topic started 5 years 9 months ago, by tfischb Last Post 5 years 9 months ago by tfischb	Replies:2 Views:3696	Last Post by tfischb 5 years 9 months ago
error: invalid command name "La::mevsvd_br" during secondry str. analysis Topic started 5 years 11 months ago, by cm Last Post 5 years 10 months ago by cm	Replies:4 Views:3299	Last Post by cm 5 years 10 months ago
regarding disulfide bonds Topic started 6 years 1 week ago, by cm Last Post 6 years 1 week ago by peterkroon	Replies:8 Views:4736	Last Post by peterkroon 6 years 1 week ago
neutralization of martini protein cg Topic started 6 years 2 weeks ago, by cm Last Post 6 years 2 weeks ago by peterkroon	Replies:1 Views:3005	Last Post by peterkroon 6 years 2 weeks ago
recentering the protein Topic started 6 years 2 weeks ago, by cm Last Post 6 years 2 weeks ago by cm	Replies:2 Views:3263	Last Post by cm 6 years 2 weeks ago
how to make two pdb in a one file using martinize py scripts Topic started 6 years 1 month ago, by cm Last Post 6 years 4 weeks ago by peterkroon	Replies:10 Views:4002	Last Post by peterkroon 6 years 4 weeks ago
How to cappe a C terminal residue in MARTINI? Is it important when the protein i Topic started 6 years 1 month ago, by z.sichaib Last Post 6 years 1 month ago by z.sichaib	Replies:0 Views:2345	Last Post by z.sichaib 6 years 1 month ago
Capping residues Topic started 6 years 11 months ago, by edesantis Last Post 6 years 1 month ago by z.sichaib	Replies:1 Views:3042	Last Post by z.sichaib 6 years 1 month ago
intrinsically disordered protein Topic started 6 years 4 months ago, by dariush Last Post 6 years 4 months ago by peterkroon	Replies:3 Views:3537	Last Post by peterkroon 6 years 4 months ago
hole in the simulation box Topic started 6 years 8 months ago, by edesantis Last Post 6 years 8 months ago by edesantis	Replies:7 Views:5998	Last Post by edesantis 6 years 8 months ago
Simulation with applied electric field Topic started 6 years 11 months ago, by DB Last Post 6 years 11 months ago by peterkroon	Replies:1 Views:3416	Last Post by peterkroon 6 years 11 months ago
collagen parameter from MARTINIZE.py Topic started 6 years 11 months ago, by gupta.rakesh2 Last Post 6 years 11 months ago by gupta.rakesh2	Replies:1 Views:2900	Last Post by gupta.rakesh2 6 years 11 months ago
multiple chain Topic started 6 years 11 months ago, by albumns Last Post 6 years 11 months ago by albumns	Replies:1 Views:3027	Last Post by albumns 6 years 11 months ago
Martini Collagen Topic started 7 years 8 months ago, by Jingjie Yeo Last Post 6 years 11 months ago by gupta.rakesh2	Replies:2 Views:3332	Last Post by gupta.rakesh2 6 years 11 months ago
Collagen parameters Topic started 6 years 11 months ago, by gupta.rakesh2 Last Post 6 years 11 months ago by gupta.rakesh2	Replies:0 Views:2589	Last Post by gupta.rakesh2 6 years 11 months ago
Simulation of Proline mutant in membrane blows up Topic started 7 years 1 week ago, by simon Last Post 7 years 1 week ago by peterkroon	Replies:5 Views:3472	Last Post by peterkroon 7 years 1 week ago
amino acid bonds Topic started 13 years 3 months ago, by yamahdi Last Post 7 years 1 month ago by johnd 1 2	Replies:23 Views:13.7k	Last Post by johnd 7 years 1 month ago
Are proteins flexible around kinked TMs? Topic started 7 years 2 months ago, by michaelvlevine Last Post 7 years 2 months ago by mnmelo	Replies:2 Views:3451	Last Post by mnmelo 7 years 2 months ago

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Proteins 142 topics