Martini Philosophy 82 topics

Why 4-to-1 mapping? Why a limited number of particle types?

Subject	Replies / Views	Last Post
Backbone dihedrals at ends of helix Topic started 2 years 10 months ago, by slall Last Post 2 years 9 months ago by paulocts	Replies:1 Views:1987	Last Post by paulocts 2 years 9 months ago
interaction energy Topic started 3 years 3 weeks ago, by shaukat_i Last Post 3 years 3 weeks ago by shaukat_i	Replies:4 Views:2305	Last Post by shaukat_i 3 years 3 weeks ago
Charged beads in Martini Topic started 3 years 3 months ago, by bond_007 Last Post 3 years 3 months ago by bond_007	Replies:0 Views:2463	Last Post by bond_007 3 years 3 months ago
Problem in AA to CG file conversion of RNA strand! Topic started 3 years 7 months ago, by mukhergm Last Post 3 years 7 months ago by mukhergm	Replies:0 Views:2853	Last Post by mukhergm 3 years 7 months ago
Problem in AA to CG conversion of RNA strand Topic started 3 years 10 months ago, by mukhergm Last Post 3 years 7 months ago by mukhergm	Replies:5 Views:3046	Last Post by mukhergm 3 years 7 months ago
Electrostatic interactions Topic started 3 years 8 months ago, by JBinder Last Post 3 years 8 months ago by JBinder	Replies:0 Views:1942	Last Post by JBinder 3 years 8 months ago
Density for octane incorrect even though bonded parameters are correct. Topic started 3 years 9 months ago, by yogi@martini Last Post 3 years 8 months ago by yogi@martini	Replies:2 Views:2092	Last Post by yogi@martini 3 years 8 months ago
Tryptophan Mapping Topic started 3 years 11 months ago, by z.sichaib Last Post 3 years 10 months ago by riccardo	Replies:3 Views:2838	Last Post by riccardo 3 years 10 months ago
Parametrising new molecule based on known fragment - tryptophan Topic started 4 years 2 days ago, by z.sichaib Last Post 3 years 11 months ago by z.sichaib	Replies:2 Views:2767	Last Post by z.sichaib 3 years 11 months ago
Separately set the charge states of termini Topic started 4 years 3 weeks ago, by tomma Last Post 4 years 3 weeks ago by tomma	Replies:0 Views:3555	Last Post by tomma 4 years 3 weeks ago
Masses of the beads in protein Topic started 4 years 4 months ago, by aishwarya Last Post 4 years 3 months ago by riccardo	Replies:1 Views:2113	Last Post by riccardo 4 years 3 months ago
Density of martini water Topic started 4 years 3 months ago, by yogi@martini Last Post 4 years 3 months ago by yogi@martini	Replies:2 Views:2726	Last Post by yogi@martini 4 years 3 months ago
Parametrizing a new molecule based on known fragments Topic started 4 years 5 months ago, by Hot Last Post 4 years 5 months ago by bart	Replies:5 Views:1873	Last Post by bart 4 years 5 months ago
Mapping of Benzene Ring Topic started 4 years 6 months ago, by Hot Last Post 4 years 6 months ago by Hot	Replies:2 Views:2879	Last Post by Hot 4 years 6 months ago
Polymer model building confusion Topic started 4 years 6 months ago, by Hot Last Post 4 years 6 months ago by Hot	Replies:0 Views:1824	Last Post by Hot 4 years 6 months ago
Bead division problem Topic started 4 years 7 months ago, by Hot Last Post 4 years 6 months ago by Hot	Replies:4 Views:2014	Last Post by Hot 4 years 6 months ago
Error in metadynamics run with plumed Topic started 4 years 7 months ago, by Imamul Last Post 4 years 7 months ago by riccardo	Replies:1 Views:2202	Last Post by riccardo 4 years 7 months ago
Martini Dielectric Constant Question Topic started 5 years 3 months ago, by nlogn Last Post 4 years 8 months ago by bond_007	Replies:6 Views:3050	Last Post by bond_007 4 years 8 months ago
Doubts about the operation of free energy technology-free sampling Topic started 4 years 9 months ago, by Hot Last Post 4 years 8 months ago by Hot	Replies:2 Views:1841	Last Post by Hot 4 years 8 months ago
No corresponding bead type can be found for the new molecule Topic started 4 years 9 months ago, by Hot Last Post 4 years 9 months ago by Hot	Replies:4 Views:2157	Last Post by Hot 4 years 9 months ago

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Martini Philosophy 82 topics