Tools 312 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Martinize with Martini 3 Topic started 2 years 11 months ago, by ldibartolo Last Post 2 years 10 months ago by riccardo	Replies:2 Views:9178	Last Post by riccardo 2 years 10 months ago
broken script? Topic started 2 years 11 months ago, by nvita_07 Last Post 2 years 11 months ago by vainikka	Replies:1 Views:1258	Last Post by vainikka 2 years 11 months ago
Backward Mapping for lipid (CHOL): cannot compile Topic started 3 years 1 month ago, by Pham Last Post 2 years 11 months ago by cneale 1 2	Replies:24 Views:4491	Last Post by cneale 2 years 11 months ago
backward with POPE and POPS Topic started 5 years 6 months ago, by soltak Last Post 2 years 11 months ago by cneale	Replies:11 Views:24.7k	Last Post by cneale 2 years 11 months ago
it can help to add cutoffs in the first EM for backward.py Topic started 3 years 3 days ago, by cneale Last Post 3 years 3 days ago by cneale	Replies:0 Views:1849	Last Post by cneale 3 years 3 days ago
martinize2 error with termini Topic started 3 years 1 month ago, by Spinetti Last Post 3 years 1 week ago by peterkroon	Replies:14 Views:3165	Last Post by peterkroon 3 years 1 week ago
Gmx distance error：double free or corruption (!prev): 0x0000000001386d60 *** Topic started 3 years 2 weeks ago, by 若水无风 Last Post 3 years 2 weeks ago by 若水无风	Replies:0 Views:1394	Last Post by 若水无风 3 years 2 weeks ago
Info on combined use of the Martini 3 force field and Go̅-like models Topic started 3 years 2 months ago, by moon Last Post 3 years 1 month ago by riccardo	Replies:4 Views:4266	Last Post by riccardo 3 years 1 month ago
MARTINI2.3P, MARTINI2.2refP and MARTINI2.2polIon Topic started 3 years 1 month ago, by konarkb Last Post 3 years 1 month ago by riccardo	Replies:2 Views:1079	Last Post by riccardo 3 years 1 month ago
Non-standard residue to CG model Topic started 3 years 2 months ago, by aashuph16221 Last Post 3 years 2 months ago by riccardo	Replies:1 Views:1424	Last Post by riccardo 3 years 2 months ago
Order Parameter Calculation Topic started 7 years 4 days ago, by Imamul Last Post 3 years 3 months ago by sajjad	Replies:7 Views:6027	Last Post by sajjad 3 years 3 months ago
gromit/martinate.sh using martini3: itp file included multiple times in topology Topic started 3 years 3 months ago, by O.Laprevote Last Post 3 years 3 months ago by O.Laprevote	Replies:0 Views:3072	Last Post by O.Laprevote 3 years 3 months ago
Backmapping protein-membrane system built with insane Topic started 3 years 3 months ago, by fviscarra Last Post 3 years 3 months ago by tsjerk	Replies:1 Views:1039	Last Post by tsjerk 3 years 3 months ago
Backward Mapping for Martini3 Topic started 3 years 3 months ago, by kaplajon Last Post 3 years 3 months ago by kaplajon	Replies:0 Views:15.7k	Last Post by kaplajon 3 years 3 months ago
do-order-gmx5.py Topic started 3 years 4 months ago, by atefeh.ghlzd Last Post 3 years 4 months ago by vainikka	Replies:1 Views:1618	Last Post by vainikka 3 years 4 months ago
Where are bbsc.sh and addDihedral.tcl Topic started 3 years 5 months ago, by zy_dut Last Post 3 years 4 months ago by riccardo	Replies:1 Views:2262	Last Post by riccardo 3 years 4 months ago
Problem compiling vmd with the tng plugin Topic started 3 years 6 months ago, by Dom Last Post 3 years 6 months ago by Dom	Replies:0 Views:1442	Last Post by Dom 3 years 6 months ago
Martinize dssp "The system cannot find the path specified" Topic started 3 years 6 months ago, by p.albanese Last Post 3 years 6 months ago by p.albanese	Replies:0 Views:1527	Last Post by p.albanese 3 years 6 months ago
cg_bonds.tlc issue Topic started 3 years 6 months ago, by bellafrizzo Last Post 3 years 6 months ago by bellafrizzo	Replies:6 Views:3119	Last Post by bellafrizzo 3 years 6 months ago
Protein - membrane lipids contacts Topic started 5 years 7 months ago, by almeida Last Post 3 years 8 months ago by Luciferase	Replies:5 Views:2925	Last Post by Luciferase 3 years 8 months ago

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General Purpose Coarse-Grained Force Field

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Tools 312 topics