Tools 312 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
martinize.py Topic started 3 years 8 months ago, by atefeh.ghlzd Last Post 3 years 8 months ago by atefeh.ghlzd	Replies:2 Views:1422	Last Post by atefeh.ghlzd 3 years 8 months ago
how to add ions Topic started 14 years 1 month ago, by Justin Last Post 3 years 8 months ago by peterkroon	Replies:4 Views:11.3k	Last Post by peterkroon 3 years 8 months ago
Backmapping of ERG - problems with cis/trans and chirality Topic started 3 years 9 months ago, by F.Keller Last Post 3 years 9 months ago by F.Keller	Replies:0 Views:1301	Last Post by F.Keller 3 years 9 months ago
Visualizing a CG lipid in VMD Topic started 8 years 8 months ago, by zidarko Last Post 3 years 9 months ago by 964027479 1 2	Replies:21 Views:20.6k	Last Post by 964027479 3 years 9 months ago
Backmapping fails, Martini POPC lipids to charmm36 Topic started 3 years 10 months ago, by z.sichaib Last Post 3 years 10 months ago by z.sichaib	Replies:1 Views:2046	Last Post by z.sichaib 3 years 10 months ago
dssp-2.0.4-linux and dssp2ssd.py and mult-chains Topic started 10 years 7 months ago, by stevesei Last Post 3 years 10 months ago by rjt	Replies:3 Views:5763	Last Post by rjt 3 years 10 months ago
Backward with PUPC/PDPC (16:0/22:6) Topic started 3 years 11 months ago, by CharlyE Last Post 3 years 10 months ago by CharlyE	Replies:2 Views:1464	Last Post by CharlyE 3 years 10 months ago
How to get bond connecting information for coarse grain models? Topic started 4 years 2 weeks ago, by darrenphua Last Post 3 years 11 months ago by peterkroon	Replies:3 Views:2298	Last Post by peterkroon 3 years 11 months ago
Bonds between two chains/molecules Topic started 4 years 1 month ago, by amin_sagar Last Post 4 years 1 month ago by amin_sagar	Replies:4 Views:2063	Last Post by amin_sagar 4 years 1 month ago
backward.py -kick feature silently turned off Topic started 4 years 2 months ago, by cneale Last Post 4 years 2 months ago by riccardo	Replies:1 Views:2122	Last Post by riccardo 4 years 2 months ago
Charges for CDL1 and CDL2 in insane.py Topic started 4 years 2 months ago, by pradyumn Last Post 4 years 2 months ago by pradyumn	Replies:4 Views:1790	Last Post by pradyumn 4 years 2 months ago
Cis peptide bond problem with backward mapping Topic started 6 years 1 month ago, by maxime.louet Last Post 4 years 2 months ago by tsjerk	Replies:5 Views:2790	Last Post by tsjerk 4 years 2 months ago
dssp secondary structure Topic started 4 years 2 months ago, by imankatouzian Last Post 4 years 2 months ago by imankatouzian	Replies:0 Views:1582	Last Post by imankatouzian 4 years 2 months ago
Backmapping a new molecule Topic started 4 years 3 months ago, by P_Banerjee Last Post 4 years 3 months ago by P_Banerjee	Replies:4 Views:5697	Last Post by P_Banerjee 4 years 3 months ago
Can someone give me CG files for PDB ID: 6vsb Topic started 4 years 3 months ago, by yogi@martini Last Post 4 years 3 months ago by vainikka	Replies:1 Views:1679	Last Post by vainikka 4 years 3 months ago
backward - error Topic started 4 years 4 months ago, by poojaric Last Post 4 years 4 months ago by riccardo	Replies:2 Views:1410	Last Post by riccardo 4 years 4 months ago
backward.py problem determining mapping coordinates Topic started 6 years 2 months ago, by sdixit Last Post 4 years 4 months ago by riccardo 1 2	Replies:28 Views:12.5k	Last Post by riccardo 4 years 4 months ago
Martinize.py - missing residues in the created itp files Topic started 4 years 4 months ago, by z.sichaib Last Post 4 years 4 months ago by z.sichaib	Replies:7 Views:2532	Last Post by z.sichaib 4 years 4 months ago
CG model for pre-miRNA structure Topic started 4 years 6 months ago, by DulaJ Last Post 4 years 6 months ago by DulaJ	Replies:0 Views:1317	Last Post by DulaJ 4 years 6 months ago
SUPER LARGE RNA TO CG Topic started 4 years 9 months ago, by wind Last Post 4 years 6 months ago by tsjerk	Replies:4 Views:1827	Last Post by tsjerk 4 years 6 months ago

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General Purpose Coarse-Grained Force Field

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Tools 312 topics