Tools 312 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Insane explote my protein .- Topic started 1 year 9 months ago, by bqAlvii Last Post 1 year 9 months ago by bqAlvii	Replies:0 Views:887	Last Post by bqAlvii 1 year 9 months ago
Martinize2 protein with more than 99,999 atoms Topic started 1 year 10 months ago, by TomasV Last Post 1 year 10 months ago by TomasV	Replies:2 Views:1250	Last Post by TomasV 1 year 10 months ago
backward.py fails with "list index out of range" Topic started 6 years 8 months ago, by scm177 Last Post 1 year 11 months ago by Saman Fatihi 1 2	Replies:32 Views:12.5k	Last Post by Saman Fatihi 1 year 11 months ago
backward.py errors Topic started 2 years 1 day ago, by chandrimaM Last Post 2 years 1 day ago by chandrimaM	Replies:0 Views:890	Last Post by chandrimaM 2 years 1 day ago
insane to create a bilayer and nanodisc in the same box Topic started 2 years 3 weeks ago, by aa456 Last Post 2 years 1 week ago by tsjerk	Replies:1 Views:1029	Last Post by tsjerk 2 years 1 week ago
Martinize2 and ASN beads Topic started 2 years 4 weeks ago, by kianarp Last Post 2 years 4 weeks ago by kianarp	Replies:0 Views:1034	Last Post by kianarp 2 years 4 weeks ago
Martini 3 lipids back map to All Atom Topic started 2 years 2 months ago, by ldibartolo Last Post 2 years 2 months ago by ldibartolo	Replies:0 Views:1364	Last Post by ldibartolo 2 years 2 months ago
Using HOLE script with Martini2 systems Topic started 2 years 2 months ago, by Weerakoon Last Post 2 years 2 months ago by Weerakoon	Replies:0 Views:1017	Last Post by Weerakoon 2 years 2 months ago
To generate itp file for a molecule Topic started 2 years 2 months ago, by tanvipar123 Last Post 2 years 2 months ago by riccardo	Replies:1 Views:1227	Last Post by riccardo 2 years 2 months ago
To generate include topology file for a molecule Topic started 2 years 2 months ago, by tanvipar123 Last Post 2 years 2 months ago by riccardo	Replies:1 Views:1205	Last Post by riccardo 2 years 2 months ago
Backward mapping for protein Topic started 2 years 5 months ago, by abhinavsri89 Last Post 2 years 2 months ago by Balaban	Replies:6 Views:1522	Last Post by Balaban 2 years 2 months ago
gmx sasa AND gmx energy Topic started 2 years 2 months ago, by Guruge Last Post 2 years 2 months ago by Guruge	Replies:0 Views:1141	Last Post by Guruge 2 years 2 months ago
g_density3Darea Topic started 2 years 4 months ago, by guoli Last Post 2 years 3 months ago by guoli	Replies:6 Views:1260	Last Post by guoli 2 years 3 months ago
Martinize2: Protein with too many chains Topic started 2 years 4 months ago, by outihaa Last Post 2 years 4 months ago by bart	Replies:2 Views:1106	Last Post by bart 2 years 4 months ago
Martinize: Charged Histidine incorrectly defined Topic started 2 years 9 months ago, by peter Last Post 2 years 4 months ago by mason	Replies:2 Views:1339	Last Post by mason 2 years 4 months ago
How can I generate a topology for a peptide contain unnatural amino acids and a Topic started 2 years 6 months ago, by Kalindu Last Post 2 years 6 months ago by xavier	Replies:1 Views:1446	Last Post by xavier 2 years 6 months ago
SAXS calculation form Martini simulation Topic started 2 years 6 months ago, by arthurmluz Last Post 2 years 6 months ago by xavier	Replies:1 Views:2851	Last Post by xavier 2 years 6 months ago
How to fix martinize.py error? Topic started 2 years 10 months ago, by human369 Last Post 2 years 7 months ago by human369	Replies:3 Views:1420	Last Post by human369 2 years 7 months ago
[Backward mapping] POPS result atomistic structure missing molecules Topic started 2 years 7 months ago, by Pham Last Post 2 years 7 months ago by Pham	Replies:0 Views:1259	Last Post by Pham 2 years 7 months ago
Visualization script cannot access files in other folders Topic started 2 years 7 months ago, by peter Last Post 2 years 7 months ago by riccardo	Replies:1 Views:1190	Last Post by riccardo 2 years 7 months ago

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General Purpose Coarse-Grained Force Field

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Tools 312 topics