Tools 311 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
calculating lipid order parameter. Topic started 4 years 9 months ago, by scinikhil Last Post 4 years 9 months ago by riccardo	Replies:1 Views:1793	Last Post by riccardo 4 years 9 months ago
backmapped structure not the same as the Initial starting structures Topic started 4 years 10 months ago, by aishwarya Last Post 4 years 10 months ago by aishwarya	Replies:4 Views:1450	Last Post by aishwarya 4 years 10 months ago
Chain break handling in martinize Topic started 4 years 10 months ago, by johnd Last Post 4 years 10 months ago by johnd	Replies:4 Views:1493	Last Post by johnd 4 years 10 months ago
Software inconsistency error:Some interactions seem to be assigned multiple time Topic started 4 years 11 months ago, by cm Last Post 4 years 11 months ago by riccardo	Replies:3 Views:3101	Last Post by riccardo 4 years 11 months ago
MM/PBSA or MM/GBSA with Martini Simulations Topic started 5 years 1 week ago, by loklui Last Post 4 years 11 months ago by xavier	Replies:1 Views:1729	Last Post by xavier 4 years 11 months ago
Use of TNG to visualize a Martini trajectory Topic started 5 years 3 weeks ago, by alfredo Last Post 5 years 2 weeks ago by alfredo	Replies:6 Views:10k	Last Post by alfredo 5 years 2 weeks ago
Constructing protein+bilayer with Insane Topic started 5 years 1 month ago, by P_Banerjee Last Post 5 years 3 weeks ago by P_Banerjee	Replies:2 Views:1496	Last Post by P_Banerjee 5 years 3 weeks ago
Issue with martinize.py Topic started 5 years 2 months ago, by P_Banerjee Last Post 5 years 2 months ago by P_Banerjee	Replies:5 Views:1615	Last Post by P_Banerjee 5 years 2 months ago
Missing beads of Glycolipids: INSANE.py Topic started 5 years 3 months ago, by Chusuth Last Post 5 years 3 months ago by bart	Replies:1 Views:1592	Last Post by bart 5 years 3 months ago
backmapping error message Topic started 5 years 4 months ago, by aishwarya Last Post 5 years 4 months ago by aishwarya	Replies:2 Views:1691	Last Post by aishwarya 5 years 4 months ago
how to add 0.5 M NaCl solution Topic started 5 years 4 months ago, by cm Last Post 5 years 4 months ago by tsjerk	Replies:5 Views:2467	Last Post by tsjerk 5 years 4 months ago
Problem determining mapping coordinates for atom C3 of residue POPC Topic started 5 years 5 months ago, by z.sichaib Last Post 5 years 5 months ago by z.sichaib	Replies:3 Views:2484	Last Post by z.sichaib 5 years 5 months ago
How to assess the quality of the reverse transformation? Topic started 5 years 6 months ago, by z.sichaib Last Post 5 years 5 months ago by z.sichaib	Replies:10 Views:2828	Last Post by z.sichaib 5 years 5 months ago
martini script Topic started 11 years 5 months ago, by nivedita Last Post 5 years 6 months ago by riccardo	Replies:14 Views:15.9k	Last Post by riccardo 5 years 6 months ago
Determining the relative abundance for lipids while using INSANE? Topic started 5 years 6 months ago, by anjukris Last Post 5 years 6 months ago by anjukris	Replies:0 Views:1832	Last Post by anjukris 5 years 6 months ago
Backmapping a big trajectory Topic started 5 years 6 months ago, by z.sichaib Last Post 5 years 6 months ago by riccardo	Replies:1 Views:2113	Last Post by riccardo 5 years 6 months ago
backward.py not able to unbreak molecules Topic started 5 years 11 months ago, by sdixit Last Post 5 years 6 months ago by riccardo	Replies:4 Views:3878	Last Post by riccardo 5 years 6 months ago
Backward.py error while submitting cg gro file Topic started 5 years 8 months ago, by anjukris Last Post 5 years 7 months ago by riccardo	Replies:2 Views:5045	Last Post by riccardo 5 years 7 months ago
backward.py error Topic started 9 years 10 months ago, by arnis Last Post 5 years 7 months ago by riccardo	Replies:3 Views:8248	Last Post by riccardo 5 years 7 months ago
genareting more peptides/molecules in a lipdi bilayer Topic started 5 years 9 months ago, by Newguy Last Post 5 years 8 months ago by Pim	Replies:3 Views:2378	Last Post by Pim 5 years 8 months ago

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Tools 311 topics