Lipidome

Martini 2 lipid parameters are listed below according to their major categories. For explanation of the lipid naming schema and the Martini 2 lipid parameterization philosophy please see the Martini 2 lipid details page. For further background reading on the Martini 2 lipidome, see:

References to these works can be found in the headers of the corresponding .itp files.

Phosphatidylcholine (PC)

Lipid Coordinates Topology Mapping
di-C08:0-C10:0 PC (DTPC) DTPC-em.gro [itp] Not available
di-C12:0-C14:0 PC (DLPC) DLPC-em.gro [itp] CHARMM: [map]
GROMOS: [map]
di-C16:0-C18:0 PC (DPPC) DPPC-em.gro [itp]
Alt optimal: [itp]
Alt extensible: [itp]		 CHARMM: [map]
GROMOS: [map]
AMBER: [map]
di-C20:0-C22:0 PC (DBPC) DBPC-em.gro [itp] GROMOS: [map]
di-C12:1-C14:1 PC (DYPC) DYPC-em.gro [itp] Not available
di-C16:1-C18:1 PC (DVPC) DVPC-em.gro [itp] Not available
di-C16:1-C18:1 PC (DOPC) DOPC-em.gro [itp]
Alt optimal: [itp]
Alt extensible: [itp]		 CHARMM: [map]
di-C16:2-C18:2 PC (DIPC) DIPC-em.gro [itp] Not available
di-C16:3-C18:3 PC (DFPC) DFPC-em.gro [itp] Not available
di-C20:1-C22:1 PC (DGPC) DGPC-em.gro [itp] Not available
di-C20:4-C22:5 PC (DAPC) DAPC-em.gro [itp] Not available
di-C24:6-C26:6 PC (DRPC) DRPC-em.gro [itp] Not available
di-C24:1-C26:1 PC (DNPC) DNPC-em.gro [itp] Not available
C12:0/16:0 PC (LPPC) LPPC-em.gro [itp] Not available
C16:0/18:1 PC (POPC) POPC-em.gro [itp] CHARMM: [map]
GROMOS: [map]
C16:0/20:1 PC (PGPC) PGPC-em.gro [itp] Not available
C16:0/20:2 PC (PEPC) PEPC-em.gro [itp] Not available
C16:0/18:2 PC (PIPC) PIPC-em.gro [itp] Not available
C16:0/20:4 PC (PAPC) PAPC-em.gro [itp] Not available
C16:0/22:6 PC (PUPC) PUPC-em.gro [itp] Not available
C16:0/24:6 PC (PRPC) PRPC-em.gro [itp] Not available

Phosphatidylethanolamine (PE)

Lipid Coordinates Topology Mapping
di-C08:0-C10:0 PE (DTPE) DTPE-em.gro [itp] Not available
di-C12:0-C14:0 PE (DLPE) DLPE-em.gro [itp] Not available
di-C16:0-C18:0 PE (DPPE) DPPE-em.gro [itp] Not available
di-C20:0-C22:0 PE (DBPE) DBPE-em.gro [itp] Not available
di-C24:0-C26:0 PE (DXPE) DXPE-em.gro [itp] Not available
di-C12:1-C14:1 PE (DYPE) DYPE-em.gro [itp] Not available
di-C16:1-C18:1 PE (DVPE) DVPE-em.gro [itp] Not available
di-C16:1-C18:1 PE (DOPE) DOPE-em.gro [itp] Not available
di-C16:2-C18:2 PE (DIPE) DIPE-em.gro [itp] Not available
di-C16:3-C18:3 PE (DFPE) DFPE-em.gro [itp] Not available
di-C20:1-C22:1 PE (DGPE) DGPE-em.gro [itp] Not available
di-C20:4-C22:5 PE (DAPE) DAPE-em.gro [itp] Not available
di-C20:5-C22:6 PE (DUPE) DUPE-em.gro [itp] Not available
di-C24:6-C26:6 PE (DRPE) DRPE-em.gro [itp] Not available
di-C24:1-C26:1 PE (DNPE) DNPE-em.gro [itp] Not available
C12:0/16:0 PE (LPPE) LPPE-em.gro [itp] Not available
C16:0/18:1 PE (POPE) POPE-em.gro [itp] Not available
C16:0/20:1 PE (PGPE) PGPE-em.gro [itp] Not available
C16:0/20:3 PE (PQPE) PQPE-em.gro [itp] Not available
C16:0/18:2 PE (PIPE) PIPE-em.gro [itp] Not available
C16:0/20:4 PE (PAPE) PAPE-em.gro [itp] Not available
C16:0/22:6 PE (PUPE) PUPE-em.gro [itp] Not available
C16:0/24:6 PE (PRPE) PRPE-em.gro [itp] Not available

Phosphatidylserine (PS)

Lipid Coordinates Topology Mapping
di-C08:0-C10:0 PS (DTPS) DTPS-em.gro [itp] Not available
di-C12:0-C14:0 PS (DLPS) DLPS-em.gro [itp] Not available
di-C16:0-C18:0 PS (DPPS) DPPS-em.gro [itp] Not available
di-C20:0-C22:0 PS (DBPS) DBPS-em.gro [itp] Not available
di-C24:0-C26:0 PS (DXPS) DXPS-em.gro [itp] Not available
di-C12:1-C14:1 PS (DYPS) DYPS-em.gro [itp] Not available
di-C16:1-C18:1 PS (DVPS) DVPS-em.gro [itp] Not available
di-C16:1-C18:1 PS (DOPS) DOPS-em.gro [itp] Not available
di-C16:2-C18:2 PS (DIPS) DIPS-em.gro [itp] Not available
di-C16:3-C18:3 PS (DFPS) DFPS-em.gro [itp] Not available
di-C20:1-C22:1 PS (DGPS) DGPS-em.gro [itp] Not available
di-C20:4-C22:5 PS (DAPS) DAPS-em.gro [itp] Not available
di-C20:5-C22:6 PS (DUPS) DUPS-em.gro [itp] Not available
di-C24:6-C26:6 PS (DRPS) DRPS-em.gro [itp] Not available
di-C24:1-C26:1 PS (DNPS) DNPS-em.gro [itp] Not available
C12:0/16:0 PS (LPPS) LPPS-em.gro [itp] Not available
C16:0/18:1 PS (POPS) POPS-em.gro [itp] Not available
C16:0/20:1 PS (PGPS) PGPS-em.gro [itp] Not available
C16:0/20:3 PS (PQPS) PQPS-em.gro [itp] Not available
C16:0/18:2 PS (PIPS) PIPS-em.gro [itp] Not available
C16:0/20:4 PS (PAPS) PAPS-em.gro [itp] Not available
C16:0/22:6 PS (PUPS) PUPS-em.gro [itp] Not available
C16:0/24:6 PS (PRPS) PRPS-em.gro [itp] Not available

Phosphatidylglycerol (PG)

Lipid Coordinates Topology Mapping
di-C08:0-C10:0 PG (DTPG) DTPG-em.gro [itp] Not available
di-C12:0-C14:0 PG (DLPG) DLPG-em.gro [itp] Not available
di-C16:0-C18:0 PG (DPPG) DPPG-em.gro [itp] CHARMM: [map]
di-C20:0-C22:0 PG (DBPG) DBPG-em.gro [itp] Not available
di-C24:0-C26:0 PG (DXPG) DXPG-em.gro [itp] Not available
di-C12:1-C14:1 PG (DYPG) DYPG-em.gro [itp] Not available
di-C16:1-C18:1 PG (DVPG) DVPG-em.gro [itp] Not available
di-C16:1-C18:1 PG (DOPG) DOPG-em.gro [itp] Not available
di-C16:2-C18:2 PG (DIPG) DIPG-em.gro [itp] Not available
di-C16:3-C18:3 PG (DFPG) DFPG-em.gro [itp] Not available
di-C20:1-C22:1 PG (DGPG) DGPG-em.gro [itp] Not available
di-C20:4-C22:5 PG (DAPG) DAPG-em.gro [itp] Not available
di-C24:6-C26:6 PG (DRPG) DRPG-em.gro [itp] Not available
di-C24:1-C26:1 PG (DNPG) DNPG-em.gro [itp] Not available
C12:0/16:0 PG (LPPG) LPPG-em.gro [itp] Not available
C16:0/18:1 PG (POPG) POPG-em.gro [itp] Not available
C16:0/20:1 PG (PGPG) PGPG-em.gro [itp] Not available
C16:0/18:2 PG (PIPG) PIPG-em.gro [itp] Not available
C16:0/20:4 PG (PAPG) PAPG-em.gro [itp] Not available
C16:0/24:6 PG (PRPG) PRPG-em.gro [itp] Not available
C18:1/16:0 PG (OPPG) OPPG-em.gro [itp] Not available
C16:1(3t)/16:0 PG (JPPG) JPPG-em.gro [itp] Not available
C16:1(3t)/18:3 PG (JFPG) JFPG-em.gro [itp] Not available

Phosphatidic acid (PA)

Lipid Coordinates Topology Mapping
di-C08:0-C10:0 PA (DTPA) DTPA-em.gro [itp] Not available
di-C12:0-C14:0 PA (DLPA) DLPA-em.gro [itp] Not available
di-C16:0-C18:0 PA (DPPA) DPPA-em.gro [itp] Not available
di-C20:0-C22:0 PA (DBPA) DBPA-em.gro [itp] Not available
di-C24:0-C26:0 PA (DXPA) DXPA-em.gro [itp] Not available
di-C12:1-C14:1 PA (DYPA) DYPA-em.gro [itp] Not available
di-C16:1-C18:1 PA (DVPA) DVPA-em.gro [itp] Not available
di-C16:1-C18:1 PA (DOPA) DOPA-em.gro [itp] Not available
di-C16:2-C18:2 PA (DIPA) DIPA-em.gro [itp] Not available
di-C16:3-C18:3 PA (DFPA) DFPA-em.gro [itp] Not available
di-C20:1-C22:1 PA (DGPA) DGPA-em.gro [itp] Not available
di-C20:4-C22:5 PA (DAPA) DAPA-em.gro [itp] Not available
di-C24:6-C26:6 PA (DRPA) DRPA-em.gro [itp] Not available
di-C24:1-C26:1 PA (DNPA) DNPA-em.gro [itp] Not available
C12:0/16:0 PA (LPPA) LPPA-em.gro [itp] Not available
C16:0/18:1 PA (POPA) POPA-em.gro [itp] Not available
C16:0/20:1 PA (PGPA) PGPA-em.gro [itp] Not available
C16:0/18:2 PA (PIPA) PIPA-em.gro [itp] Not available
C16:0/20:4 PA (PAPA) PAPA-em.gro [itp] Not available
C16:0/22:6 PA (PUPA) PUPA-em.gro [itp] Not available
C16:0/24:6 PA (PRPA) PRPA-em.gro [itp] Not available

Phosphatidylinositols

Phosphatidylinositol (PI)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 PI (DPPI) DPPI-em.gro [itp] Not available
C16:0/18:1 (PVPI) PVPI-em.gro [itp] Not available
C16:0/18:1 PI (POPI) POPI-em.gro [itp] Not available
C16:0/18:2 PI (PIPI) PIPI-em.gro [itp] Not available
C16:0/20:4 PI (PAPI) PAPI-em.gro [itp] Not available
C16:0/22:6 PI (PUPI) PUPI-em.gro [itp] Not available

Phosphatidylinositol phosphate (PIP1)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 PIP (DPP1) DPP1-em.gro [itp] Not available
C16:0/18:1 PIP (PVP1) PVP1-em.gro [itp] Not available
C16:0/18:1 PIP (POP1) POP1-em.gro [itp] Not available

Phosphatidylinositol bisphosphate (PIP2)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 PIP2 (DPP2) DPP2-em.gro [itp] Not available
C16:0/18:1 PIP2 (PVP2) PVP2-em.gro [itp] Not available
C16:0/18:1 PIP2 (POP2) POP2-em.gro [itp] Not available

Phosphatidylinositol trisphosphate (PIP3)

Lipid Coordinates Topology Mapping
C16:0/18:1 PIP3 (PVP3) PVP3-em.gro [itp] Not available
C16:0/18:1 PIP3 (POP3) POP3-em.gro [itp] Not available

Glycerols

Diacylglycerol (DAG)

Lipid Coordinates Topology Mapping
C16:0/18:1 DAG (PVDG) PVDG-em.gro [itp] Not available
C16:0/18:1 DAG (PODG) PODG-em.gro [itp] Not available
C16:0/18:2 DAG (PIDG) PIDG-em.gro [itp] Not available
C16:0/20:4 DAG (PADG) PADG-em.gro [itp] Not available
C16:0/22:6 DAG (PUDG) PUDG-em.gro [itp] Not available

Triacylglycerol (TAG)

Lipid Coordinates Topology Mapping
Glyceryl-trioleate Not available [itp] Not available

Lysophosphatidylcholine (LPC)

Lipid Coordinates Topology Mapping
C04:0-C06:0 LPC (CPC) CPC-em.gro [itp] Not available
C08:0-C10:0 LPC (TPC) TPC-em.gro [itp] Not available
C12:0-C14:0 LPC (LPC) LPC-em.gro [itp] Not available
C16:0-C18:0 LPC (PPC) PPC-em.gro [itp] Not available
C16:1-C18:1 LPC (VPC) VPC-em.gro [itp] Not available
C16:1-C18:1 LPC (OPC) OPC-em.gro [itp] Not available
C16:2-C18:2 LPC (IPC) IPC-em.gro [itp] Not available
C20:4-C22:5 LPC (APC) APC-em.gro [itp] Not available
C20:5-C22:6 LPC (UPC) UPC-em.gro [itp] Not available

Sphingomyelin (SM)

Lipid Coordinates Topology Mapping
C(d18:1/18:0) SM (DPSM) DPSM-em.gro [itp] Not available
C(d20:1/20:0) SM (DBSM) DBSM-em.gro [itp] Not available
C(d24:1/24:0) SM (DXSM) DXSM-em.gro [itp] Not available
C(d18:1/18:1) SM (PVSM) PVSM-em.gro [itp] Not available
C(d18:1/18:1) SM (POSM) POSM-em.gro [itp] Not available
C(d18:1/22:1) SM (PGSM) PGSM-em.gro [itp] Not available
C(d18:1/24:1) SM (PNSM) PNSM-em.gro [itp] Not available
C(d20:1/24:1) SM (BNSM) BNSM-em.gro [itp] Not available
C(d24:1/24:1) SM (XNSM) XNSM-em.gro [itp] Not available

Ceramide (CER)

Lipid Coordinates Topology Mapping
C(d18:1/18:0) CER (DPCE) DPCE-em.gro [itp] Not available
C(d24:1/24:0) CER (DXCE) DXCE-em.gro [itp] Not available
C(d18:1/24:1) CER (PNCE) PNCE-em.gro [itp] Not available
C(d24:1/24:1) CER (XNCE) XNCE-em.gro [itp] Not available

Glycosphingolipids

Glucosylceramide (GS)

Lipid Coordinates Topology Mapping
C(d16:1/16:0) GS (DPGS) DPGS-em.gro [itp] Not available

Monosialotetrahexosylganglioside (GM1)

Lipid Coordinates Topology Mapping
C(d18:1/18:0) GM1 (DPG1) DPG1-em.gro [itp] GROMOS: [map]
C(d20:1/20:0) GM1 (DBG1) DBG1-em.gro [itp] Not available
C(d24:1/24:0) GM1 (DXG1) DXG1-em.gro [itp] Not available
C(d18:1/24:1) GM1 (PNG1) PNG1-em.gro [itp] Not available
C(d24:1/24:1) GM1 (XNG1) XNG1-em.gro [itp] Not available

Monosialodihexosylganglioside (GM3)

Lipid Coordinates Topology Mapping
C(d18:1/18:0) GM3 (DPG3) DPG3-em.gro [itp] GROMOS: [map]
C(d20:1/20:0) GM3 (DBG3) DBG3-em.gro [itp] Not available
C(d24:1/24:0) GM3 (DXG3) DXG3-em.gro [itp] Not available
C(d18:1/24:1) GM3 (PNG3) PNG3-em.gro [itp] Not available
C(d24:1/24:1) GM3 (XNG3) XNG3-em.gro [itp] Not available

Glycoglycerolipids

Monogalactosyl and/or monoglucosyl diacylglycerol (MGDG)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 MGDG (DPMG) Not available [itp] Not available
C18:1/16:0 MGDG (OPMG) OPMG.gro [itp] Not available
di-C18:3 MGDG (DFMG) DFMG.gro [itp] Not available
C18:3/16:0 MGDG (FPMG) FPMG.gro [itp] Not available

Sulfoquinovosyl diacylglycerol (SQDG)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 SQDG (DPSG) DPSG.gro [itp] Not available
C18:1/16:0 SQDG (OPSG) OPSG.gro [itp] Not available
C18:3/16:0 SQDG (FPSG) FPSG.gro [itp] Not available

Digalactosyl diacylglycerol (DGDG)

Lipid Coordinates Topology Mapping
di-C16:0-C18:0 DGDG (DPGG) Not available [itp] Not available
C18:1/16:0 DGDG (OPGG) OPGG.gro [itp] Not available
di-C18:3 DGDG (DFGG) DFGG.gro [itp] Not available
C18:3/16:0 DGDG (FPGG) FPGG.gro [itp] Not available

Sterols

Lipid Coordinates Topology Mapping
cholesterol (CHOL) Not available [itp] CHARMM: [map]
GROMOS: [map]
AMBER: [map]
cholate (CHOA) Not available [itp] Not available
cholesteryl oleate (CHYO) Not available [itp] Not available
ergosterol (ERGO) Not available [itp] Not available
bacteriohopanetetrol (HBHT) Not available [itp] Not available
diploptene (HDPT) Not available [itp] Not available
hopane (HHOP) Not available [itp] Not available
hopanoid polycyclic group (HOPR) Not available [itp] Not available

Surfactants

Lipid Coordinates Topology Mapping
beta-octylglucoside (BOG) Not available [itp] Not available
alkyl-PEG (C12E2) martini_v2.0_C12E2.gro [itp] Not available
alkyl-PEG (C12E4) martini_v2.0_C12E4.gro [itp] Not available
alkyl-PEG (C12E6) martini_v2.0_C12E6.gro [itp] Not available
dodecylmaltoside (DDM) Not available [itp] Not available
dodecylphosphocholine (DPC) Not available [itp] Not available
sodium dodecyl sulfate (SDS) Not available [itp] Not available

Fatty acids (FA)

Lipid Coordinates Topology Mapping
lauric (C12:0) / myristic (C14:0) acid (LCA) Not available Charged: [itp]
Uncharged: [itp]		 Not available
palmitic (C16:0) / stearic (C18:0) acid (PCA) Not available Charged: [itp]
Uncharged: [itp]		 Not available
arachidic (C20:0) / behenic (C22:0) acid (BCA) Not available Charged: [itp]
Uncharged: [itp]		 Not available
lignoceroyl (C24:0) / hexacosanoic (C26:0) acid (XCA) Not available Charged: [itp]
Uncharged: [itp]		 Not available
arachidonic (C20:4) / docosapentaenoic (C22:5) acid (ACA) Not available Charged: [itp]
Uncharged: [itp]		 Not available
docosahexaenoic (C22:6) acid (DHA) Not available Charged: [itp]
Uncharged: [itp]		 Not available

Others

Lipid Coordinates Topology Mapping
cyclic di-DPPC Bolalipid (BOLA) Not available [itp] Not available
acyclic di-DPPC Bolalipid (BOLB) Not available [itp] Not available
cardiolipin (CL) 0- (CDL0) CDL0.gro [itp] Not available
cardiolipin (CL) 1- (CDL1) CDL1.gro [itp] Not available
cardiolipin (CL) 2- (CDL2) CDL2.gro [itp] Not available
lipopolysaccharide (LPS) LPS_cg.gro [itp] Not available
lipid A - Bacteroides fragilis (BFRA) Bfragilis.gro [itp] Not available
lipid A - Bordetella pertussis (BPER) Bpertussis.gro [itp] Not available
lipid A - Campylobacter jejuni (CJEJ) Cjejuni.gro [itp] Not available
lipid A - Chlamydia trachomatis (CTRA) Ctrachomatis.gro [itp] Not available
lipid A - Helicobacter pylori (HPYL) Hpylori.gro [itp] Not available
lipid A - Neisseria meningitidis (NMEN) Nmeningitidis.gro [itp] Not available
lipid A - Porphyromonas gingivalis (PGIN) Pgingivalis.gro [itp] Not available
lipid A - Pseudomonas aeruginosa (PARU) Paeruginosa_LPA.gro [itp] Not available
lipid A+core - Pseudomonas aeruginosa (PARC) Paeruginosa_LPC.gro [itp] Not available
lipid A - Salmonella minnesota (SMIN) Sminnesota.gro [itp] Not available
di-C16:0-C18:0 TAP (DPTAP) Not available [itp] Not available
di-C16:1-C18:1 TAP (DOTAP) Not available [itp] Not available
di-C16:1-C18:1 TAP (DITAP) Not available [itp] Not available