Tutorials

  1. Lipid bilayers - Part I: Self-assembly

  2. Lipid bilayers - Part II: Complex mixtures using Insane

  3. Proteins - Part I: Basics and Martinize 2

  4. Proteins - Part II: TM proteins and Protein complexes

    4.1. Ceramide β€” VDAC1 binding in a membrane (Collab tutorial)

    4.2. Lipidomics study: Mag2 in a POPC and POPC-POPG 3:1 membrane (Collab tutorial)

  5. Parametrization of a new small molecule

  6. Protein-small molecule binding

  7. Reverse coarse-graining with Backward

  8. Polyply: generating input parameters and coordinates

  9. TS2CG: membranes with user-defined shapes and compositions

  10. Running Martini simulation with ddcMD

  11. Titratable Martini for constant pH simulations

  12. prolintpy: Automatic analysis of lipid-protein interactions

  13. Dual resolution membrane simulation