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mdp Options 107 topics

Simulation parameters for Martini simulations.

Subject Replies / Views Last Post
unanswered
How to add scaling factor for protein−lipid Lennard−Jones interaction.
Topic started 1 month 4 days ago, by Saman Fatihi
Last Post 1 month 4 days ago
by Saman Fatihi
Replies:0
Views:336
Last Post by Saman Fatihi
1 month 4 days ago
normal
Martini 3 not that stable with aromatic amino acids?
Topic started 11 months 2 weeks ago, by congwang
Last Post 10 months 2 weeks ago
by pcmartini
Replies:2
Views:3075
Last Post by pcmartini
10 months 2 weeks ago
unanswered
two vdw potential
Topic started 1 year 4 months ago, by tarraga
Last Post 1 year 4 months ago
by tarraga
Replies:0
Views:1837
Last Post by tarraga
1 year 4 months ago
unanswered
Martini3 protein simulation keeps crashing
Topic started 1 year 6 months ago, by anjukris
Last Post 1 year 6 months ago
by anjukris
Replies:0
Views:1245
Last Post by anjukris
1 year 6 months ago
normal
PME parameters: Based on "New" methodology
Topic started 2 years 6 months ago, by peter
Last Post 2 years 1 month ago
by riccardo
Replies:6
Views:4403
Last Post by riccardo
2 years 1 month ago
normal
Simulation in a vacuum for tweaking parameters
Topic started 2 years 2 months ago, by roshan2004
Last Post 2 years 2 months ago
by riccardo
Replies:1
Views:1401
Last Post by riccardo
2 years 2 months ago
normal
Arbitrary distribution of electric field
Topic started 2 years 3 months ago, by ncfm
Last Post 2 years 3 months ago
by riccardo
Replies:1
Views:1219
Last Post by riccardo
2 years 3 months ago
unanswered
Martini 3: Recommended Simulation Parameters
Topic started 2 years 4 months ago, by Luke Kruse
Last Post 2 years 4 months ago
by Luke Kruse
Replies:0
Views:2383
Last Post by Luke Kruse
2 years 4 months ago
normal
choosing mdp file for lipid simulation
Topic started 3 years 4 months ago, by shakira
Last Post 2 years 6 months ago
by saini
Replies:1
Views:3471
Last Post by saini
2 years 6 months ago
unanswered
Using PME to Martini
Topic started 2 years 7 months ago, by Jinyoung
Last Post 2 years 7 months ago
by Jinyoung
Replies:0
Views:1420
Last Post by Jinyoung
2 years 7 months ago
unanswered
How can I accelerate MD simulation with Martini force field?
Topic started 2 years 8 months ago, by Jinyoung
Last Post 2 years 8 months ago
by Jinyoung
Replies:0
Views:1634
Last Post by Jinyoung
2 years 8 months ago
normal
Warning oscillational period with Elnedyn
Topic started 2 years 9 months ago, by moon
Last Post 2 years 8 months ago
by SophieKing
Replies:2
Views:1838
Last Post by SophieKing
2 years 8 months ago
normal
ELNeDyn remove elastic constraints from select residues
Topic started 3 years 4 months ago, by drewaight
Last Post 2 years 9 months ago
by riccardo
Replies:1
Views:1987
Last Post by riccardo
2 years 9 months ago
normal
LINCS error
Topic started 3 years 8 months ago, by mw00847
Last Post 2 years 10 months ago
by riccardo
Replies:5
Views:5130
Last Post by riccardo
2 years 10 months ago
normal
Lincs warning for protein-membrane system
Topic started 3 years 1 month ago, by mpandey
Last Post 3 years 1 month ago
by mpandey
Replies:2
Views:2199
Last Post by mpandey
3 years 1 month ago
normal
PME, PBC, and pressure mdp settings for a 2D polarized MARTINI simulation
Topic started 3 years 7 months ago, by mboy@seas.upenn.edu
Last Post 3 years 6 months ago
by mboy@seas.upenn.edu
Replies:2
Views:2467
Last Post by mboy@seas.upenn.edu
3 years 6 months ago
normal
minimization-vac.mdp
Topic started 4 years 2 months ago, by imankatouzian
Last Post 3 years 7 months ago
by brajk
Replies:4
Views:3242
Last Post by brajk
3 years 7 months ago
normal
Protein breaking up with extended bonds
Topic started 3 years 9 months ago, by darrenphua
Last Post 3 years 9 months ago
by darrenphua
Replies:2
Views:2410
Last Post by darrenphua
3 years 9 months ago
normal
Segmentation faults - core dumped error
Topic started 3 years 10 months ago, by gypsy
Last Post 3 years 10 months ago
by gypsy
Replies:4
Views:2385
Last Post by gypsy
3 years 10 months ago
unanswered
How to choose the value of compressibility?
Topic started 3 years 10 months ago, by sagar
Last Post 3 years 10 months ago
by sagar
Replies:0
Views:2091
Last Post by sagar
3 years 10 months ago
  1. General topics
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