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Dry Martini

Details: Last Updated: Thursday, 11 June 2015 12:30

The Dry Martini paper is out

C. Arnarez, J.J. Uusitalo, M.F. Masman, H.I. Ingólfsson, D.H. de Jong, M.N. Melo, X. Periole, A.H. De Vries, S.J. Marrink. Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent. JCTC, 11:260–275, 2015. abstract

Try out yourself? Download parameters here.

Plasma membrane

Details: Last Updated: Thursday, 11 June 2015 16:18

Plasma membrane model composed of 60+ lipid types

H.I. Ingólfsson, M.N. Melo, F.J. van Eerden, C. Arnarez, C.A. López, T.A. Wassenaar, X. Periole, A.H. De Vries, D.P. Tieleman, S.J. Marrink. Lipid organization of the plasma membrane. JACS, 136:14554-14559, 2014. doi: 10.1021/ja507832e open access

Example membranes and parameter files are provided here

Martini in Science

Details: Last Updated: Saturday, 16 August 2014 09:20

Publication featuring the Martini force field in Science:

"Polyunsaturated phospholipids facilitate membrane deformation and fission by endocytic proteins"

Pinot et al., Science 2014, 345:693-697

Martini DNA beta

Details: Last Updated: Wednesday, 22 July 2015 10:03

A beta version of Martini parameters for both single-stranded and double-stranded DNA are available for testing.

The parameters are still under development and currently we recommend testing them in sytems that contain either stable double-stranded DNAs or short single-stranded DNAs.